PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G241800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-X1
Protein Properties Length: 1147aa    MW: 123873 Da    PI: 8.1039
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G241800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.74.9e-08340358119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H+Cqk+CH+GpC pC+
  Aqcoe3G241800.1.p 340 CGRHRCQKICHTGPCEPCR 358
                        ******************7 PP

2zf-NF-X117.59.1e-06404421118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H C+++CH+GpC++C
  Aqcoe3G241800.1.p 404 CGNHVCGQICHPGPCGEC 421
                        ****************** PP

3zf-NF-X124.27.3e-08462480119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H C++lCH G+CppC+
  Aqcoe3G241800.1.p 462 CGIHHCNELCHAGDCPPCR 480
                        ******************7 PP

4zf-NF-X119.22.6e-06556574119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H+C++lCH G CppC 
  Aqcoe3G241800.1.p 556 CGQHSCESLCHIGHCPPCL 574
                        ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.59E-6159229No hitNo description
PROSITE profilePS500168.876166228IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.45169226IPR001841Zinc finger, RING-type
PROSITE patternPS013590169225IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.79E-4259323No hitNo description
SMARTSM004380.29285303IPR000967Zinc finger, NF-X1-type
PfamPF014228.7287302IPR000967Zinc finger, NF-X1-type
CDDcd060084.19E-11330378No hitNo description
PfamPF014222.6E-6340358IPR000967Zinc finger, NF-X1-type
SMARTSM004381.4E-4340359IPR000967Zinc finger, NF-X1-type
CDDcd060081.45E-7394436No hitNo description
PfamPF014220.0074404421IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0012404423IPR000967Zinc finger, NF-X1-type
CDDcd060081.31E-12452498No hitNo description
PfamPF014223.3E-5462480IPR000967Zinc finger, NF-X1-type
SMARTSM004383.0E-5462481IPR000967Zinc finger, NF-X1-type
PfamPF0142219518529IPR000967Zinc finger, NF-X1-type
SMARTSM00438230518548IPR000967Zinc finger, NF-X1-type
CDDcd060083.22E-8546598No hitNo description
PfamPF014227.3E-4556573IPR000967Zinc finger, NF-X1-type
SMARTSM004383.0E-4556575IPR000967Zinc finger, NF-X1-type
CDDcd060082.36E-4603651No hitNo description
PfamPF0142212613630IPR000967Zinc finger, NF-X1-type
SMARTSM004380.28613631IPR000967Zinc finger, NF-X1-type
PfamPF014220.0025666681IPR000967Zinc finger, NF-X1-type
SMARTSM004380.17666698IPR000967Zinc finger, NF-X1-type
PfamPF0142246700726IPR000967Zinc finger, NF-X1-type
SMARTSM004380.14707728IPR000967Zinc finger, NF-X1-type
PfamPF014243.5E-5839904IPR001374R3H domain
Gene3DG3DSA:3.30.70.3303.5E-4954999IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1147 aa     Download sequence    Send to blast
MSFQHNNTNN NNSRRRRESS GSRNPNPSAQ QRQEWIPKGT PSSSSSSSST VVVSTPNPNP  60
NPNPPPTCSS SSSSKTSYFN GIGGGGVSSS TTPTPTPSPS VVVTSTTATL IDQNRSKGVL  120
NKMKFDRGFS KKKDSSGGGG DARITTNKDL LPQLVQELKD KLTKGNVECM ICYDMVRRSA  180
PIWSCSSCFS IFHLNCIKKW ARAPTSVDLS ATEKNQRINW RCPGCQSVQL SSAKEIHYIC  240
FCGKRPDPPF DLYLTPHSCG EPCGKPLDRV VISRSNHDDD DDDRCPHLCV LQCHPGPCPP  300
CKAFAPPRLC PCGKKTITTR CFDNKSMLTC GDQCNKVLEC GRHRCQKICH TGPCEPCRIP  360
IDAVCFCKKE SQLVFCGEMT VKGEMKVSDG VFSCTSLCGG RLNCGNHVCG QICHPGPCGE  420
CELTPARIKT CCCGKTMLQK ERTTCLDPIP TCPQICGKCL PCGIHHCNEL CHAGDCPPCR  480
TVVSQSCRCG SSSRNVECFR KMNEKFVCEK ACGRKKNCGR HRCSERCCPL STSKNQLSGD  540
WDPHLCSIIC GKKLRCGQHS CESLCHIGHC PPCLETIFTD LTCACGKTSI PPPQPCGTAP  600
PSCQNPCLVP QPCGHSSAHS CHFGDCSPCS IPVAKECIGG HVLLRNIPCG SKDIRCNQLC  660
GKTRICGMHA CARTCHPFPC DLSSVSGTSS SSKSSCGQTC GAPRRDCRHT CTAVCHPSAL  720
CPDARCEFPV TITCSCGRLT ATVPCDAGGS SGGFRVDSIF EASVVQKLPV PLQPVEENGK  780
KVPLGQRKLV CDEECAKMER KRVLADAFDI STPNLDVLHF GENSTVSDLL VDLFRRDSKW  840
VLAIEERFKY LVTGKNKGGT THGLRVHVFC PMLKEKRDAV RLIAERWKLS VHAAGWEPKR  900
FLVVHVTPKS KVPSRMLGPK GSLPMNVSHP LVFDPLVDMD PRLVVSLLDL PGESDISALV  960
LRFGGECELV WLNDKNALAV FSDPVRAATA LRRLDHGSAY HSVVALHNGG ASAASSGTSA  1020
WGGAGVTKTN PWKKAVVQES QWEDDSWGSE NLSGGSYVHG QVWKGKEASF ASSGNRWNAL  1080
DPDIVPKSLA EDLPGTGNTD KHGIGIHSTT ESVSQVHSLN LSGQSSVGID IAEPSEVVDD  1140
WEKAYD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663894.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLF6GSQ10.0F6GSQ1_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1